Atlas Pipeline Reference

Interactive API-style documentation of the Atlas 22-agent drug discovery pipeline. Each "endpoint" is a pipeline stage — showing the agent, required inputs, output artifacts, and role description.

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How to read this

• Left sidebar — pipeline stages grouped by phase (1–5)
• Each stage — shows which agent runs, what files it needs as input, and what it produces
• Descriptions — extracted from each agent's role definition in agents/*.md
• Input/Output schemas — the markdown artifacts that flow between stages

This is a declarative view of config/pipeline.json + agents/*.md from the Atlas repository.